J4_8FKW_002

3D structure

PDB id

8FKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

8FKW|1|L3|A|218, 8FKW|1|L3|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FKW|1|L3|C|196
8FKW|1|L3|A|197
8FKW|1|L3|A|198
8FKW|1|L3|G|199
*
8FKW|1|L3|C|215
8FKW|1|L3|C|216
8FKW|1|L3|C|217
8FKW|1|L3|A|218
8FKW|1|L3|G|219
8FKW|1|L3|C|220
8FKW|1|L3|C|221
8FKW|1|L3|C|222
*
8FKW|1|L3|G|226
8FKW|1|L3|A|227
8FKW|1|L3|C|228
*
8FKW|1|L3|G|240
8FKW|1|L3|G|241
8FKW|1|L3|U|242
8FKW|1|L3|A|243
8FKW|1|L3|G|244

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L26

Chain SA

60S ribosomal protein L4

Chain SZ

Nucleolar protein 16