J4_8FKX_002

3D structure

PDB id

8FKX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

8FKX|1|L3|A|218, 8FKX|1|L3|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FKX|1|L3|C|196
8FKX|1|L3|A|197
8FKX|1|L3|A|198
8FKX|1|L3|G|199
*
8FKX|1|L3|C|215
8FKX|1|L3|C|216
8FKX|1|L3|C|217
8FKX|1|L3|A|218
8FKX|1|L3|G|219
8FKX|1|L3|C|220
8FKX|1|L3|C|221
8FKX|1|L3|C|222
*
8FKX|1|L3|G|226
8FKX|1|L3|A|227
8FKX|1|L3|C|228
*
8FKX|1|L3|G|240
8FKX|1|L3|G|241
8FKX|1|L3|U|242
8FKX|1|L3|A|243
8FKX|1|L3|G|244

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L26

Chain SA

60S ribosomal protein L4

Chain SZ

Nucleolar protein 16