J4_8FKY_002

3D structure

PDB id

8FKY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

8FKY|1|L3|A|218, 8FKY|1|L3|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FKY|1|L3|C|196
8FKY|1|L3|A|197
8FKY|1|L3|A|198
8FKY|1|L3|G|199
*
8FKY|1|L3|C|215
8FKY|1|L3|C|216
8FKY|1|L3|C|217
8FKY|1|L3|A|218
8FKY|1|L3|G|219
8FKY|1|L3|C|220
8FKY|1|L3|C|221
8FKY|1|L3|C|222
*
8FKY|1|L3|G|226
8FKY|1|L3|A|227
8FKY|1|L3|C|228
*
8FKY|1|L3|G|240
8FKY|1|L3|G|241
8FKY|1|L3|U|242
8FKY|1|L3|A|243
8FKY|1|L3|G|244

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L26

Chain SA

60S ribosomal protein L4

Chain SZ

Nucleolar protein 16