J4_8FOM_011

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FOM_011 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.0573

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8FOM|1|RA|G|1772
8FOM|1|RA|A|1773
8FOM|1|RA|C|1774
8FOM|1|RA|U|1775
8FOM|1|RA|G|1776
*
8FOM|1|RA|C|1788
8FOM|1|RA|A|1789
8FOM|1|RA|C|1790
8FOM|1|RA|A|1791
8FOM|1|RA|G|1792
*
8FOM|1|RA|C|1827
8FOM|1|RA|G|1828
8FOM|1|RA|A|1829
8FOM|1|RA|C|1830
*
8FOM|1|RA|G|1975
8FOM|1|RA|U|1976
8FOM|1|RA|A|1977
8FOM|1|RA|A|1978
8FOM|1|RA|C|1979

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2