J4_8FOM_018
3D structure
- PDB id
- 8FOM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.58 Å
Loop
- Sequence
- UUAG*CAG*UUG(7MG)(C4J)CG*CA
- Length
- 16 nucleotides
- Bulged bases
- 8FOM|1|XV|U|8, 8FOM|1|XV|C4J|47, 8FOM|1|XV|C|48
- QA status
- Modified nucleotides: 7MG, C4J
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8FOM_018 not in the Motif Atlas
- Homologous match to J4_3TUP_001
- Geometric discrepancy: 0.2636
- The information below is about J4_3TUP_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_58311.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
8FOM|1|XV|U|7
8FOM|1|XV|U|8
8FOM|1|XV|A|9
8FOM|1|XV|G|10
*
8FOM|1|XV|C|25
8FOM|1|XV|A|26
8FOM|1|XV|G|27
*
8FOM|1|XV|U|43
8FOM|1|XV|U|44
8FOM|1|XV|G|45
8FOM|1|XV|7MG|46
8FOM|1|XV|C4J|47
8FOM|1|XV|C|48
8FOM|1|XV|G|49
*
8FOM|1|XV|C|65
8FOM|1|XV|A|66
Current chains
- Chain XV
- P-site tRNA^Lys(SUU)
Nearby chains
- Chain XM
- 30S ribosomal protein S13
- Chain YA
- Large subunit ribosomal RNA; LSU rRNA
- Chain YQ
- 50S ribosomal protein L16
Coloring options: