J4_8FON_022
3D structure
- PDB id
- 8FON (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.64 Å
Loop
- Sequence
- GGUUC*GGUUAG*CU*ACCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 8FON|1|YA|U|1341
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8FON_022 not in the Motif Atlas
- Homologous match to J4_9DFE_004
- Geometric discrepancy: 0.0738
- The information below is about J4_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77353.1
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
8FON|1|YA|G|1310
8FON|1|YA|G|1311
8FON|1|YA|U|1312
8FON|1|YA|U|1313
8FON|1|YA|C|1314
*
8FON|1|YA|G|1338
8FON|1|YA|G|1339
8FON|1|YA|U|1340
8FON|1|YA|U|1341
8FON|1|YA|A|1342
8FON|1|YA|G|1343
*
8FON|1|YA|C|1404
8FON|1|YA|U|1405
*
8FON|1|YA|A|1597
8FON|1|YA|C|1598
8FON|1|YA|C|1599
8FON|1|YA|C|1600
8FON|1|YA|G|1601
8FON|1|YA|U|1602
8FON|1|YA|A|1603
8FON|1|YA|C|1604
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y7
- 50S ribosomal protein L34
- Chain YX
- 50S ribosomal protein L23
Coloring options: