J4_8FR8_004

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GGUUC*GGUGAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

8FR8|1|A|G|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FR8_004 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0938

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.2

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

8FR8|1|A|G|1425
8FR8|1|A|G|1426
8FR8|1|A|U|1427
8FR8|1|A|U|1428
8FR8|1|A|C|1429
*
8FR8|1|A|G|1453
8FR8|1|A|G|1454
8FR8|1|A|U|1455
8FR8|1|A|G|1456
8FR8|1|A|A|1457
8FR8|1|A|G|1458
*
8FR8|1|A|C|1519
8FR8|1|A|C|1520
*
8FR8|1|A|G|1815
8FR8|1|A|C|1816
8FR8|1|A|C|1817
8FR8|1|A|C|1818
8FR8|1|A|G|1819
8FR8|1|A|U|1820
8FR8|1|A|A|1821
8FR8|1|A|C|1822

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains

Chain 0

50S ribosomal protein L34

Chain Z

50S ribosomal protein L23