J4_8FR8_011

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GAGUAACAC*GGC*GUAG*CC

Length

18 nucleotides

Bulged bases

8FR8|1|a|C|117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FR8|1|a|G|111
8FR8|1|a|A|112
8FR8|1|a|G|113
8FR8|1|a|U|114
8FR8|1|a|A|115
8FR8|1|a|A|116
8FR8|1|a|C|117
8FR8|1|a|A|118
8FR8|1|a|C|119
*
8FR8|1|a|G|238
8FR8|1|a|G|239
8FR8|1|a|C|240
*
8FR8|1|a|G|286
8FR8|1|a|U|287
8FR8|1|a|A|288
8FR8|1|a|G|289
*
8FR8|1|a|C|311
8FR8|1|a|C|312

Current chains

Chain a

16S rRNA (1511-MER)

Nearby chains

Chain q

30S ribosomal protein S16

Chain r

30S ribosomal protein S17