J4_8FR8_012

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

UU*AAUACAC*GGAAAG*CG

Length

17 nucleotides

Bulged bases

8FR8|1|a|C|179, 8FR8|1|a|A|180

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FR8|1|a|U|140
8FR8|1|a|U|141
*
8FR8|1|a|A|175
8FR8|1|a|A|176
8FR8|1|a|U|177
8FR8|1|a|A|178
8FR8|1|a|C|179
8FR8|1|a|A|180
8FR8|1|a|C|181
*
8FR8|1|a|G|207
8FR8|1|a|G|208
8FR8|1|a|A|209
8FR8|1|a|A|210
8FR8|1|a|A|211
8FR8|1|a|G|212
*
8FR8|1|a|C|219
8FR8|1|a|G|220

Current chains

Chain a

16S rRNA (1511-MER)

Nearby chains

Chain r

30S ribosomal protein S17

Chain t

30S ribosomal protein S20