J4_8FTO_004
3D structure
- PDB id
- 8FTO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with an improved MS2 tag inserted in H98
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.85 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 8FTO|1|Z|U|8, 8FTO|1|Z|U|48, 8FTO|1|Z|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8FTO_004 not in the Motif Atlas
- Homologous match to J4_9DFC_015
- Geometric discrepancy: 0.1464
- The information below is about J4_9DFC_015
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
8FTO|1|Z|G|7
8FTO|1|Z|U|8
8FTO|1|Z|G|9
8FTO|1|Z|G|10
*
8FTO|1|Z|C|26
8FTO|1|Z|G|27
8FTO|1|Z|U|28
*
8FTO|1|Z|A|44
8FTO|1|Z|A|45
8FTO|1|Z|G|46
8FTO|1|Z|G|47
8FTO|1|Z|U|48
8FTO|1|Z|C|49
8FTO|1|Z|G|50
*
8FTO|1|Z|C|66
8FTO|1|Z|C|67
Current chains
- Chain Z
- P-site tRNA-fMet
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain M
- 30S ribosomal protein S13
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- 50S ribosomal protein L16
Coloring options: