J4_8FTO_009

3D structure

PDB id

8FTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with an improved MS2 tag inserted in H98

Experimental method

ELECTRON MICROSCOPY

Resolution

1.85 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8FTO|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FTO_009 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0446

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8FTO|1|a|G|1310
8FTO|1|a|G|1311
8FTO|1|a|U|1312
8FTO|1|a|U|1313
8FTO|1|a|C|1314
*
8FTO|1|a|G|1338
8FTO|1|a|G|1339
8FTO|1|a|U|1340
8FTO|1|a|G|1341
8FTO|1|a|A|1342
8FTO|1|a|G|1343
*
8FTO|1|a|C|1404
8FTO|1|a|U|1405
*
8FTO|1|a|A|1597
8FTO|1|a|A|1598
8FTO|1|a|U|1599
8FTO|1|a|C|1600
8FTO|1|a|G|1601
8FTO|1|a|U|1602
8FTO|1|a|A|1603
8FTO|1|a|C|1604

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain s

50S ribosomal protein L23