J4_8FZD_005

3D structure

PDB id

8FZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8FZD|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FZD_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0837

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8FZD|1|A|G|1310
8FZD|1|A|G|1311
8FZD|1|A|U|1312
8FZD|1|A|U|1313
8FZD|1|A|C|1314
*
8FZD|1|A|G|1338
8FZD|1|A|G|1339
8FZD|1|A|U|1340
8FZD|1|A|G|1341
8FZD|1|A|A|1342
8FZD|1|A|G|1343
*
8FZD|1|A|C|1404
8FZD|1|A|U|1405
*
8FZD|1|A|A|1597
8FZD|1|A|A|1598
8FZD|1|A|U|1599
8FZD|1|A|C|1600
8FZD|1|A|G|1601
8FZD|1|A|U|1602
8FZD|1|A|A|1603
8FZD|1|A|C|1604

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain V

50S ribosomal protein L23