3D structure

PDB id
8FZD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CU(2MG)*CG*CCUAAGGUAG*CGAAUG
Length
21 nucleotides
Bulged bases
8FZD|1|A|U|1971
QA status
Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8FZD_009 not in the Motif Atlas
Homologous match to J4_9DFE_008
Geometric discrepancy: 0.1148
The information below is about J4_9DFE_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_93343.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

8FZD|1|A|C|1833
8FZD|1|A|U|1834
8FZD|1|A|2MG|1835
*
8FZD|1|A|C|1905
8FZD|1|A|G|1906
*
8FZD|1|A|C|1924
8FZD|1|A|C|1925
8FZD|1|A|U|1926
8FZD|1|A|A|1927
8FZD|1|A|A|1928
8FZD|1|A|G|1929
8FZD|1|A|G|1930
8FZD|1|A|U|1931
8FZD|1|A|A|1932
8FZD|1|A|G|1933
*
8FZD|1|A|C|1967
8FZD|1|A|G|1968
8FZD|1|A|A|1969
8FZD|1|A|A|1970
8FZD|1|A|U|1971
8FZD|1|A|G|1972

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L2
Chain a
Small subunit ribosomal RNA; SSU rRNA
Chain x
Transfer RNA; tRNA

Coloring options:


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