J4_8FZD_015
3D structure
- PDB id
- 8FZD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- A(4SU)AG*CAG*CGU(G7M)UCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 8FZD|1|x|4SU|8, 8FZD|1|x|U|47, 8FZD|1|x|C|48
- QA status
- Modified nucleotides: 4SU, G7M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8FZD_015 not in the Motif Atlas
- Homologous match to J4_3TUP_001
- Geometric discrepancy: 0.206
- The information below is about J4_3TUP_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
8FZD|1|x|A|7
8FZD|1|x|4SU|8
8FZD|1|x|A|9
8FZD|1|x|G|10
*
8FZD|1|x|C|25
8FZD|1|x|A|26
8FZD|1|x|G|27
*
8FZD|1|x|C|43
8FZD|1|x|G|44
8FZD|1|x|U|45
8FZD|1|x|G7M|46
8FZD|1|x|U|47
8FZD|1|x|C|48
8FZD|1|x|C|49
*
8FZD|1|x|G|65
8FZD|1|x|U|66
Current chains
- Chain x
- P-site phenylalanyl-tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain O
- 50S ribosomal protein L16
- Chain m
- 30S ribosomal protein S13
- Chain w
- Peptide chain release factor 1
Coloring options: