J4_8FZE_002

3D structure

PDB id

8FZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FZE_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0771

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8FZE|1|A|G|297
8FZE|1|A|G|298
8FZE|1|A|A|299
8FZE|1|A|A|300
8FZE|1|A|G|301
*
8FZE|1|A|C|316
8FZE|1|A|G|317
8FZE|1|A|C|318
8FZE|1|A|G|319
*
8FZE|1|A|C|323
8FZE|1|A|A|324
8FZE|1|A|G|325
*
8FZE|1|A|C|337
8FZE|1|A|G|338
8FZE|1|A|U|339
8FZE|1|A|A|340
8FZE|1|A|C|341

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain W

50S ribosomal protein L24