J4_8FZE_003

3D structure

PDB id

8FZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

8FZE|1|A|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FZE_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1575

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

8FZE|1|A|C|601
8FZE|1|A|A|602
8FZE|1|A|A|603
8FZE|1|A|G|604
*
8FZE|1|A|C|624
8FZE|1|A|G|625
8FZE|1|A|A|626
8FZE|1|A|A|627
8FZE|1|A|G|628
*
8FZE|1|A|C|635
8FZE|1|A|G|636
8FZE|1|A|A|637
8FZE|1|A|G|638
*
8FZE|1|A|C|650
8FZE|1|A|G|651
8FZE|1|A|U|652
8FZE|1|A|U|653
8FZE|1|A|A|654
8FZE|1|A|A|655
8FZE|1|A|G|656

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain E

50S ribosomal protein L4

Chain N

50S ribosomal protein L15