J4_8FZE_005

3D structure

PDB id

8FZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8FZE|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FZE_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0821

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8FZE|1|A|G|1310
8FZE|1|A|G|1311
8FZE|1|A|U|1312
8FZE|1|A|U|1313
8FZE|1|A|C|1314
*
8FZE|1|A|G|1338
8FZE|1|A|G|1339
8FZE|1|A|U|1340
8FZE|1|A|G|1341
8FZE|1|A|A|1342
8FZE|1|A|G|1343
*
8FZE|1|A|C|1404
8FZE|1|A|U|1405
*
8FZE|1|A|A|1597
8FZE|1|A|A|1598
8FZE|1|A|U|1599
8FZE|1|A|C|1600
8FZE|1|A|G|1601
8FZE|1|A|U|1602
8FZE|1|A|A|1603
8FZE|1|A|C|1604

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain V

50S ribosomal protein L23