J4_8FZF_002

3D structure

PDB id

8FZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FZF_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0834

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8FZF|1|A|G|297
8FZF|1|A|G|298
8FZF|1|A|A|299
8FZF|1|A|A|300
8FZF|1|A|G|301
*
8FZF|1|A|C|316
8FZF|1|A|G|317
8FZF|1|A|C|318
8FZF|1|A|G|319
*
8FZF|1|A|C|323
8FZF|1|A|A|324
8FZF|1|A|G|325
*
8FZF|1|A|C|337
8FZF|1|A|G|338
8FZF|1|A|U|339
8FZF|1|A|A|340
8FZF|1|A|C|341

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain W

50S ribosomal protein L24