J4_8FZF_003

3D structure

PDB id

8FZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

8FZF|1|A|U|653, 8FZF|1|A|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FZF_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1699

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

8FZF|1|A|C|601
8FZF|1|A|A|602
8FZF|1|A|A|603
8FZF|1|A|G|604
*
8FZF|1|A|C|624
8FZF|1|A|G|625
8FZF|1|A|A|626
8FZF|1|A|A|627
8FZF|1|A|G|628
*
8FZF|1|A|C|635
8FZF|1|A|G|636
8FZF|1|A|A|637
8FZF|1|A|G|638
*
8FZF|1|A|C|650
8FZF|1|A|G|651
8FZF|1|A|U|652
8FZF|1|A|U|653
8FZF|1|A|A|654
8FZF|1|A|A|655
8FZF|1|A|G|656

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain E

50S ribosomal protein L4

Chain N

50S ribosomal protein L15