3D structure

PDB id
8FZF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGUUC*GGUGAG*CU*AAUCGUAC
Length
21 nucleotides
Bulged bases
8FZF|1|A|G|1341
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8FZF_005 not in the Motif Atlas
Homologous match to J4_5J7L_022
Geometric discrepancy: 0.0873
The information below is about J4_5J7L_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_69051.6
Basepair signature
cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

8FZF|1|A|G|1310
8FZF|1|A|G|1311
8FZF|1|A|U|1312
8FZF|1|A|U|1313
8FZF|1|A|C|1314
*
8FZF|1|A|G|1338
8FZF|1|A|G|1339
8FZF|1|A|U|1340
8FZF|1|A|G|1341
8FZF|1|A|A|1342
8FZF|1|A|G|1343
*
8FZF|1|A|C|1404
8FZF|1|A|U|1405
*
8FZF|1|A|A|1597
8FZF|1|A|A|1598
8FZF|1|A|U|1599
8FZF|1|A|C|1600
8FZF|1|A|G|1601
8FZF|1|A|U|1602
8FZF|1|A|A|1603
8FZF|1|A|C|1604

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain 6
50S ribosomal protein L34
Chain V
50S ribosomal protein L23

Coloring options:


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