J4_8FZF_005
3D structure
- PDB id
- 8FZF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGUUC*GGUGAG*CU*AAUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 8FZF|1|A|G|1341
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8FZF_005 not in the Motif Atlas
- Homologous match to J4_5J7L_022
- Geometric discrepancy: 0.0873
- The information below is about J4_5J7L_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69051.6
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8FZF|1|A|G|1310
8FZF|1|A|G|1311
8FZF|1|A|U|1312
8FZF|1|A|U|1313
8FZF|1|A|C|1314
*
8FZF|1|A|G|1338
8FZF|1|A|G|1339
8FZF|1|A|U|1340
8FZF|1|A|G|1341
8FZF|1|A|A|1342
8FZF|1|A|G|1343
*
8FZF|1|A|C|1404
8FZF|1|A|U|1405
*
8FZF|1|A|A|1597
8FZF|1|A|A|1598
8FZF|1|A|U|1599
8FZF|1|A|C|1600
8FZF|1|A|G|1601
8FZF|1|A|U|1602
8FZF|1|A|A|1603
8FZF|1|A|C|1604
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 6
- 50S ribosomal protein L34
- Chain V
- 50S ribosomal protein L23
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