J4_8FZF_014
3D structure
- PDB id
- 8FZF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 8FZF|1|a|C|576, 8FZF|1|a|A|815, 8FZF|1|a|C|817, 8FZF|1|a|A|819
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8FZF_014 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.0874
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8FZF|1|a|G|575
8FZF|1|a|C|576
8FZF|1|a|G|577
*
8FZF|1|a|C|764
8FZF|1|a|G|765
8FZF|1|a|A|766
8FZF|1|a|A|767
8FZF|1|a|A|768
8FZF|1|a|G|769
*
8FZF|1|a|C|810
8FZF|1|a|C|811
8FZF|1|a|G|812
8FZF|1|a|U|813
8FZF|1|a|A|814
8FZF|1|a|A|815
8FZF|1|a|A|816
8FZF|1|a|C|817
8FZF|1|a|G|818
8FZF|1|a|A|819
8FZF|1|a|U|820
8FZF|1|a|G|821
*
8FZF|1|a|C|879
8FZF|1|a|C|880
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain h
- 30S ribosomal protein S8
- Chain l
- 30S ribosomal protein S12
- Chain o
- Small ribosomal subunit protein uS15
- Chain q
- Small ribosomal subunit protein uS17
Coloring options: