3D structure

PDB id
8FZG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF3-GDPCP, RF1, P- and E-site tRNAPhe (Composite state II-A)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CU(2MG)*CG*CCUAAGGUAG*CGAAUG
Length
21 nucleotides
Bulged bases
8FZG|1|A|U|1971
QA status
Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8FZG_009 not in the Motif Atlas
Homologous match to J4_9DFE_008
Geometric discrepancy: 0.1174
The information below is about J4_9DFE_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_93343.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

8FZG|1|A|C|1833
8FZG|1|A|U|1834
8FZG|1|A|2MG|1835
*
8FZG|1|A|C|1905
8FZG|1|A|G|1906
*
8FZG|1|A|C|1924
8FZG|1|A|C|1925
8FZG|1|A|U|1926
8FZG|1|A|A|1927
8FZG|1|A|A|1928
8FZG|1|A|G|1929
8FZG|1|A|G|1930
8FZG|1|A|U|1931
8FZG|1|A|A|1932
8FZG|1|A|G|1933
*
8FZG|1|A|C|1967
8FZG|1|A|G|1968
8FZG|1|A|A|1969
8FZG|1|A|A|1970
8FZG|1|A|U|1971
8FZG|1|A|G|1972

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L2
Chain a
Small subunit ribosomal RNA; SSU rRNA
Chain x
Transfer RNA; tRNA

Coloring options:


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