3D structure

PDB id
8FZG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF3-GDPCP, RF1, P- and E-site tRNAPhe (Composite state II-A)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GCG*CGAAAG*CCGUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
8FZG|1|a|C|576, 8FZG|1|a|A|815
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8FZG_014 not in the Motif Atlas
Homologous match to J4_5J7L_003
Geometric discrepancy: 0.0825
The information below is about J4_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

8FZG|1|a|G|575
8FZG|1|a|C|576
8FZG|1|a|G|577
*
8FZG|1|a|C|764
8FZG|1|a|G|765
8FZG|1|a|A|766
8FZG|1|a|A|767
8FZG|1|a|A|768
8FZG|1|a|G|769
*
8FZG|1|a|C|810
8FZG|1|a|C|811
8FZG|1|a|G|812
8FZG|1|a|U|813
8FZG|1|a|A|814
8FZG|1|a|A|815
8FZG|1|a|A|816
8FZG|1|a|C|817
8FZG|1|a|G|818
8FZG|1|a|A|819
8FZG|1|a|U|820
8FZG|1|a|G|821
*
8FZG|1|a|C|879
8FZG|1|a|C|880

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain h
30S ribosomal protein S8
Chain l
30S ribosomal protein S12
Chain o
30S ribosomal protein S15
Chain q
30S ribosomal protein S17

Coloring options:


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