J4_8FZH_016

3D structure

PDB id

8FZH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

A(4SU)AG*CAG*CGU(7MG)UCC*GU

Length

16 nucleotides

Bulged bases

8FZH|1|y|4SU|8, 8FZH|1|y|U|47, 8FZH|1|y|C|48

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FZH_016 not in the Motif Atlas

Homologous match to J4_7UQ6_001

Geometric discrepancy: 0.3262

The information below is about J4_7UQ6_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

8FZH|1|y|A|7
8FZH|1|y|4SU|8
8FZH|1|y|A|9
8FZH|1|y|G|10
*
8FZH|1|y|C|25
8FZH|1|y|A|26
8FZH|1|y|G|27
*
8FZH|1|y|C|43
8FZH|1|y|G|44
8FZH|1|y|U|45
8FZH|1|y|7MG|46
8FZH|1|y|U|47
8FZH|1|y|C|48
8FZH|1|y|C|49
*
8FZH|1|y|G|65
8FZH|1|y|U|66

Current chains

Chain y

P-site phenylalanyl-tRNA

Nearby chains

Chain 5

50S ribosomal protein L33