J4_8FZJ_003

3D structure

PDB id

8FZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

8FZJ|1|A|U|653, 8FZJ|1|A|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FZJ_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1579

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

8FZJ|1|A|C|601
8FZJ|1|A|A|602
8FZJ|1|A|A|603
8FZJ|1|A|G|604
*
8FZJ|1|A|C|624
8FZJ|1|A|G|625
8FZJ|1|A|A|626
8FZJ|1|A|A|627
8FZJ|1|A|G|628
*
8FZJ|1|A|C|635
8FZJ|1|A|G|636
8FZJ|1|A|A|637
8FZJ|1|A|G|638
*
8FZJ|1|A|C|650
8FZJ|1|A|G|651
8FZJ|1|A|U|652
8FZJ|1|A|U|653
8FZJ|1|A|A|654
8FZJ|1|A|A|655
8FZJ|1|A|G|656

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain E

50S ribosomal protein L4

Chain N

50S ribosomal protein L15