J4_8FZJ_005

3D structure

PDB id

8FZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8FZJ|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FZJ_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0753

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8FZJ|1|A|G|1310
8FZJ|1|A|G|1311
8FZJ|1|A|U|1312
8FZJ|1|A|U|1313
8FZJ|1|A|C|1314
*
8FZJ|1|A|G|1338
8FZJ|1|A|G|1339
8FZJ|1|A|U|1340
8FZJ|1|A|G|1341
8FZJ|1|A|A|1342
8FZJ|1|A|G|1343
*
8FZJ|1|A|C|1404
8FZJ|1|A|U|1405
*
8FZJ|1|A|A|1597
8FZJ|1|A|A|1598
8FZJ|1|A|U|1599
8FZJ|1|A|C|1600
8FZJ|1|A|G|1601
8FZJ|1|A|U|1602
8FZJ|1|A|A|1603
8FZJ|1|A|C|1604

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain V

50S ribosomal protein L23