J4_8FZJ_016

3D structure

PDB id

8FZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

8FZJ|1|A|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FZJ_016 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.3645

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

8FZJ|1|A|C|1833
8FZJ|1|A|U|1834
8FZJ|1|A|2MG|1835
*
8FZJ|1|A|C|1905
8FZJ|1|A|G|1906
*
8FZJ|1|A|C|1924
8FZJ|1|A|C|1925
8FZJ|1|A|U|1926
8FZJ|1|A|A|1927
8FZJ|1|A|A|1928
8FZJ|1|A|G|1929
8FZJ|1|A|G|1930
8FZJ|1|A|U|1931
8FZJ|1|A|A|1932
8FZJ|1|A|G|1933
*
8FZJ|1|A|C|1967
8FZJ|1|A|G|1968
8FZJ|1|A|A|1969
8FZJ|1|A|A|1970
8FZJ|1|A|U|1971
8FZJ|1|A|G|1972

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA