J4_8G29_014

3D structure

PDB id

8G29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

A(4SU)AG*CAG*CGU(G7M)UCC*GU

Length

16 nucleotides

Bulged bases

8G29|1|1w|4SU|8, 8G29|1|1w|U|47, 8G29|1|1w|C|48

QA status

Modified nucleotides: 4SU, G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G29_014 not in the Motif Atlas

Homologous match to J4_6UGG_002

Geometric discrepancy: 0.2005

The information below is about J4_6UGG_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_70449.29

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

54

Unit IDs

8G29|1|1w|A|7
8G29|1|1w|4SU|8
8G29|1|1w|A|9
8G29|1|1w|G|10
*
8G29|1|1w|C|25
8G29|1|1w|A|26
8G29|1|1w|G|27
*
8G29|1|1w|C|43
8G29|1|1w|G|44
8G29|1|1w|U|45
8G29|1|1w|G7M|46
8G29|1|1w|U|47
8G29|1|1w|C|48
8G29|1|1w|C|49
*
8G29|1|1w|G|65
8G29|1|1w|U|66

Current chains

Chain 1w

A-site Aminoacylated Phe-tRNAphe

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA