J4_8G34_009

3D structure

PDB id

8G34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:1st intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

8G34|1|B|U|1971

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G34_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.2905

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

8G34|1|B|C|1833
8G34|1|B|U|1834
8G34|1|B|G|1835
*
8G34|1|B|C|1905
8G34|1|B|G|1906
*
8G34|1|B|C|1924
8G34|1|B|C|1925
8G34|1|B|U|1926
8G34|1|B|A|1927
8G34|1|B|A|1928
8G34|1|B|G|1929
8G34|1|B|G|1930
8G34|1|B|U|1931
8G34|1|B|A|1932
8G34|1|B|G|1933
*
8G34|1|B|C|1967
8G34|1|B|G|1968
8G34|1|B|A|1969
8G34|1|B|A|1970
8G34|1|B|U|1971
8G34|1|B|G|1972

Current chains

Chain B

23S

Nearby chains

Chain 6

GTPase HflX

Chain C

50S ribosomal protein L2

Chain v

Small subunit ribosomal RNA; SSU rRNA