J4_8G38_005

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8G38|1|B|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G38_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0791

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8G38|1|B|G|1310
8G38|1|B|G|1311
8G38|1|B|U|1312
8G38|1|B|U|1313
8G38|1|B|C|1314
*
8G38|1|B|G|1338
8G38|1|B|G|1339
8G38|1|B|U|1340
8G38|1|B|G|1341
8G38|1|B|A|1342
8G38|1|B|G|1343
*
8G38|1|B|C|1404
8G38|1|B|U|1405
*
8G38|1|B|A|1597
8G38|1|B|A|1598
8G38|1|B|U|1599
8G38|1|B|C|1600
8G38|1|B|G|1601
8G38|1|B|U|1602
8G38|1|B|A|1603
8G38|1|B|C|1604

Current chains

Chain B

23S

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23