J4_8G4S_003
3D structure
- PDB id
- 8G4S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.14 Å
Loop
- Sequence
- UGGCCCCCC*GCAG*CAGCCCCGAGG*CA
- Length
- 26 nucleotides
- Bulged bases
- 8G4S|1|2|C|518, 8G4S|1|2|C|519, 8G4S|1|2|C|520, 8G4S|1|2|A|607, 8G4S|1|2|C|610, 8G4S|1|2|G|615
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8G4S|1|2|U|513
8G4S|1|2|G|514
8G4S|1|2|G|515
8G4S|1|2|C|516
8G4S|1|2|C|517
8G4S|1|2|C|518
8G4S|1|2|C|519
8G4S|1|2|C|520
8G4S|1|2|C|521
*
8G4S|1|2|G|583
8G4S|1|2|C|584
8G4S|1|2|A|585
8G4S|1|2|G|586
*
8G4S|1|2|C|606
8G4S|1|2|A|607
8G4S|1|2|G|608
8G4S|1|2|C|609
8G4S|1|2|C|610
8G4S|1|2|C|611
8G4S|1|2|C|612
8G4S|1|2|G|613
8G4S|1|2|A|614
8G4S|1|2|G|615
8G4S|1|2|G|616
*
8G4S|1|2|C|716
8G4S|1|2|A|717
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain H
- 40S ribosomal protein S7
- Chain L
- SSU ribosomal protein S17P
- Chain N
- Ribosomal protein S13
- Chain W
- SSU ribosomal protein S8P (Fragment)
- Chain X
- SSU ribosomal protein S12P
- Chain b
- Ribosomal protein S27
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