J4_8G5Y_014
3D structure
- PDB id
- 8G5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.29 Å
Loop
- Sequence
- G(4SU)GG*CGU*AAG(G7M)UCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 8G5Y|1|Pt|4SU|8, 8G5Y|1|Pt|U|48, 8G5Y|1|Pt|C|49
- QA status
- Modified nucleotides: 4SU, G7M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8G5Y_014 not in the Motif Atlas
- Homologous match to J4_7VNV_001
- Geometric discrepancy: 0.1737
- The information below is about J4_7VNV_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
8G5Y|1|Pt|G|7
8G5Y|1|Pt|4SU|8
8G5Y|1|Pt|G|9
8G5Y|1|Pt|G|10
*
8G5Y|1|Pt|C|26
8G5Y|1|Pt|G|27
8G5Y|1|Pt|U|28
*
8G5Y|1|Pt|A|44
8G5Y|1|Pt|A|45
8G5Y|1|Pt|G|46
8G5Y|1|Pt|G7M|47
8G5Y|1|Pt|U|48
8G5Y|1|Pt|C|49
8G5Y|1|Pt|G|50
*
8G5Y|1|Pt|C|66
8G5Y|1|Pt|C|67
Current chains
- Chain Pt
- P-site tRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- 60S ribosomal protein L10
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SS
- 40S ribosomal protein S18
- Chain SZ
- 40S ribosomal protein S25
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