J4_8G5Z_004

3D structure

PDB id

8G5Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G5Z|1|L5|C|196
8G5Z|1|L5|A|197
8G5Z|1|L5|A|198
8G5Z|1|L5|G|199
*
8G5Z|1|L5|C|215
8G5Z|1|L5|C|216
8G5Z|1|L5|C|217
8G5Z|1|L5|A|218
8G5Z|1|L5|G|219
8G5Z|1|L5|C|220
8G5Z|1|L5|C|221
8G5Z|1|L5|C|222
*
8G5Z|1|L5|G|226
8G5Z|1|L5|A|227
8G5Z|1|L5|C|228
*
8G5Z|1|L5|G|240
8G5Z|1|L5|G|241
8G5Z|1|L5|U|242
8G5Z|1|L5|A|243
8G5Z|1|L5|G|244

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26