J4_8G60_015

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

G(4SU)GG*CGU*AAG(G7M)UCG*CC

Length

16 nucleotides

Bulged bases

8G60|1|Pt|4SU|8, 8G60|1|Pt|U|48, 8G60|1|Pt|C|49

QA status

Modified nucleotides: 4SU, G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G60_015 not in the Motif Atlas

Homologous match to J4_7VNV_001

Geometric discrepancy: 0.1921

The information below is about J4_7VNV_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_58311.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

30

Unit IDs

8G60|1|Pt|G|7
8G60|1|Pt|4SU|8
8G60|1|Pt|G|9
8G60|1|Pt|G|10
*
8G60|1|Pt|C|26
8G60|1|Pt|G|27
8G60|1|Pt|U|28
*
8G60|1|Pt|A|44
8G60|1|Pt|A|45
8G60|1|Pt|G|46
8G60|1|Pt|G7M|47
8G60|1|Pt|U|48
8G60|1|Pt|C|49
8G60|1|Pt|G|50
*
8G60|1|Pt|C|66
8G60|1|Pt|C|67

Current chains

Chain Pt

P-site tRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LI

uL16

Chain LJ

uL5

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain SS

uS13

Chain SZ

eS25