J4_8G6J_006

3D structure

PDB id

8G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

(OMC)AAAUAU*AGG*(OMC)AUGUU*AG

Length

18 nucleotides

Bulged bases

8G6J|1|L5|A|2366, 8G6J|1|L5|U|2369, 8G6J|1|L5|U|2828

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G6J|1|L5|OMC|2365
8G6J|1|L5|A|2366
8G6J|1|L5|A|2367
8G6J|1|L5|A|2368
8G6J|1|L5|U|2369
8G6J|1|L5|A|2370
8G6J|1|L5|U|2371
*
8G6J|1|L5|A|2389
8G6J|1|L5|G|2390
8G6J|1|L5|G|2391
*
8G6J|1|L5|OMC|2824
8G6J|1|L5|A|2825
8G6J|1|L5|U|2826
8G6J|1|L5|G|2827
8G6J|1|L5|U|2828
8G6J|1|L5|U|2829
*
8G6J|1|L5|A|3856
8G6J|1|L5|G|3857

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ld

60S ribosomal protein L31