J4_8G6W_007

3D structure

PDB id

8G6W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.02 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G6W_007 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.045

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8G6W|1|a|G|297
8G6W|1|a|G|298
8G6W|1|a|A|299
8G6W|1|a|A|300
8G6W|1|a|G|301
*
8G6W|1|a|C|316
8G6W|1|a|G|317
8G6W|1|a|C|318
8G6W|1|a|G|319
*
8G6W|1|a|C|323
8G6W|1|a|A|324
8G6W|1|a|G|325
*
8G6W|1|a|C|337
8G6W|1|a|G|338
8G6W|1|a|U|339
8G6W|1|a|A|340
8G6W|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24