J4_8G6X_011

3D structure

PDB id

8G6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.31 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

8G6X|1|a|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G6X_011 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1065

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

8G6X|1|a|C|1833
8G6X|1|a|U|1834
8G6X|1|a|2MG|1835
*
8G6X|1|a|C|1905
8G6X|1|a|G|1906
*
8G6X|1|a|C|1924
8G6X|1|a|C|1925
8G6X|1|a|U|1926
8G6X|1|a|A|1927
8G6X|1|a|A|1928
8G6X|1|a|G|1929
8G6X|1|a|G|1930
8G6X|1|a|U|1931
8G6X|1|a|A|1932
8G6X|1|a|G|1933
*
8G6X|1|a|C|1967
8G6X|1|a|G|1968
8G6X|1|a|A|1969
8G6X|1|a|A|1970
8G6X|1|a|U|1971
8G6X|1|a|G|1972

Current chains

Chain a

23S rRNA

Nearby chains

Chain Z

Transfer RNA; tRNA

Chain c

50S ribosomal protein L2