J4_8G6Y_001
3D structure
- PDB id
- 8G6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.09 Å
Loop
- Sequence
- GAUAG*CAG*CGUGUCC*GUC
- Length
- 18 nucleotides
- Bulged bases
- 8G6Y|1|Y|U|8, 8G6Y|1|Y|U|47, 8G6Y|1|Y|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8G6Y_001 not in the Motif Atlas
- Homologous match to J4_6ORD_031
- Geometric discrepancy: 0.3301
- The information below is about J4_6ORD_031
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_97835.1
- Basepair signature
- cWW-F-F-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8G6Y|1|Y|G|6
8G6Y|1|Y|A|7
8G6Y|1|Y|U|8
8G6Y|1|Y|A|9
8G6Y|1|Y|G|10
*
8G6Y|1|Y|C|25
8G6Y|1|Y|A|26
8G6Y|1|Y|G|27
*
8G6Y|1|Y|C|43
8G6Y|1|Y|G|44
8G6Y|1|Y|U|45
8G6Y|1|Y|G|46
8G6Y|1|Y|U|47
8G6Y|1|Y|C|48
8G6Y|1|Y|C|49
*
8G6Y|1|Y|G|65
8G6Y|1|Y|U|66
8G6Y|1|Y|C|67
Current chains
- Chain Y
- A-site tRNA Phe
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: