J4_8G7Q_002

3D structure

PDB id

8G7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the near-cognate AUG codon (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G7Q_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0893

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8G7Q|1|A|G|297
8G7Q|1|A|G|298
8G7Q|1|A|A|299
8G7Q|1|A|A|300
8G7Q|1|A|G|301
*
8G7Q|1|A|C|316
8G7Q|1|A|G|317
8G7Q|1|A|C|318
8G7Q|1|A|G|319
*
8G7Q|1|A|C|323
8G7Q|1|A|A|324
8G7Q|1|A|G|325
*
8G7Q|1|A|C|337
8G7Q|1|A|G|338
8G7Q|1|A|U|339
8G7Q|1|A|A|340
8G7Q|1|A|C|341

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain W

50S ribosomal protein L24