J4_8G7Q_003

3D structure

PDB id

8G7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the near-cognate AUG codon (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

8G7Q|1|A|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G7Q_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1745

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

8G7Q|1|A|C|601
8G7Q|1|A|A|602
8G7Q|1|A|A|603
8G7Q|1|A|G|604
*
8G7Q|1|A|C|624
8G7Q|1|A|G|625
8G7Q|1|A|A|626
8G7Q|1|A|A|627
8G7Q|1|A|G|628
*
8G7Q|1|A|C|635
8G7Q|1|A|G|636
8G7Q|1|A|A|637
8G7Q|1|A|G|638
*
8G7Q|1|A|C|650
8G7Q|1|A|G|651
8G7Q|1|A|U|652
8G7Q|1|A|U|653
8G7Q|1|A|A|654
8G7Q|1|A|A|655
8G7Q|1|A|G|656

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain E

50S ribosomal protein L4

Chain N

50S ribosomal protein L15