J4_8G7R_017
3D structure
- PDB id
- 8G7R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Escherichia coli 70S ribosome in complex with A-site tRNAIle(LAU) bound to the cognate AUA codon (Structure III)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- U(4SU)AG*CAG*UUG(G7M)(3AU)CG*CA
- Length
- 16 nucleotides
- Bulged bases
- 8G7R|1|y|3AU|47, 8G7R|1|y|C|48
- QA status
- Modified nucleotides: 4SU, G7M, 3AU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8G7R_017 not in the Motif Atlas
- Homologous match to J4_7E8O_002
- Geometric discrepancy: 0.4093
- The information below is about J4_7E8O_002
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
8G7R|1|y|U|7
8G7R|1|y|4SU|8
8G7R|1|y|A|9
8G7R|1|y|G|10
*
8G7R|1|y|C|25
8G7R|1|y|A|26
8G7R|1|y|G|27
*
8G7R|1|y|U|43
8G7R|1|y|U|44
8G7R|1|y|G|45
8G7R|1|y|G7M|46
8G7R|1|y|3AU|47
8G7R|1|y|C|48
8G7R|1|y|G|49
*
8G7R|1|y|C|65
8G7R|1|y|A|66
Current chains
- Chain y
- Isoleucine tRNA
Nearby chains
- Chain 5
- 50S ribosomal protein L33
- Chain g
- 30S ribosomal protein S7
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