J4_8G7S_002

3D structure

PDB id

8G7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with P-site tRNAIle(LAU) bound to the cognate AUA codon (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G7S_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0802

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8G7S|1|A|G|297
8G7S|1|A|G|298
8G7S|1|A|A|299
8G7S|1|A|A|300
8G7S|1|A|G|301
*
8G7S|1|A|C|316
8G7S|1|A|G|317
8G7S|1|A|C|318
8G7S|1|A|G|319
*
8G7S|1|A|C|323
8G7S|1|A|A|324
8G7S|1|A|G|325
*
8G7S|1|A|C|337
8G7S|1|A|G|338
8G7S|1|A|U|339
8G7S|1|A|A|340
8G7S|1|A|C|341

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain W

50S ribosomal protein L24