J4_8G7S_003

3D structure

PDB id

8G7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with P-site tRNAIle(LAU) bound to the cognate AUA codon (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

8G7S|1|A|U|653, 8G7S|1|A|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G7S_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.222

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

8G7S|1|A|C|601
8G7S|1|A|A|602
8G7S|1|A|A|603
8G7S|1|A|G|604
*
8G7S|1|A|C|624
8G7S|1|A|G|625
8G7S|1|A|A|626
8G7S|1|A|A|627
8G7S|1|A|G|628
*
8G7S|1|A|C|635
8G7S|1|A|G|636
8G7S|1|A|A|637
8G7S|1|A|G|638
*
8G7S|1|A|C|650
8G7S|1|A|G|651
8G7S|1|A|U|652
8G7S|1|A|U|653
8G7S|1|A|A|654
8G7S|1|A|A|655
8G7S|1|A|G|656

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain E

50S ribosomal protein L4

Chain N

50S ribosomal protein L15