J4_8G7S_005

3D structure

PDB id

8G7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with P-site tRNAIle(LAU) bound to the cognate AUA codon (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8G7S|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8G7S_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0855

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8G7S|1|A|G|1310
8G7S|1|A|G|1311
8G7S|1|A|U|1312
8G7S|1|A|U|1313
8G7S|1|A|C|1314
*
8G7S|1|A|G|1338
8G7S|1|A|G|1339
8G7S|1|A|U|1340
8G7S|1|A|G|1341
8G7S|1|A|A|1342
8G7S|1|A|G|1343
*
8G7S|1|A|C|1404
8G7S|1|A|U|1405
*
8G7S|1|A|A|1597
8G7S|1|A|A|1598
8G7S|1|A|U|1599
8G7S|1|A|C|1600
8G7S|1|A|G|1601
8G7S|1|A|U|1602
8G7S|1|A|A|1603
8G7S|1|A|C|1604

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain V

50S ribosomal protein L23