J4_8HL4_003

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

GCG*CGAAAG*CUGUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

8HL4|1|A16S|C|542, 8HL4|1|A16S|A|781

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8HL4|1|A16S|G|541
8HL4|1|A16S|C|542
8HL4|1|A16S|G|543
*
8HL4|1|A16S|C|730
8HL4|1|A16S|G|731
8HL4|1|A16S|A|732
8HL4|1|A16S|A|733
8HL4|1|A16S|A|734
8HL4|1|A16S|G|735
*
8HL4|1|A16S|C|776
8HL4|1|A16S|U|777
8HL4|1|A16S|G|778
8HL4|1|A16S|U|779
8HL4|1|A16S|A|780
8HL4|1|A16S|A|781
8HL4|1|A16S|A|782
8HL4|1|A16S|C|783
8HL4|1|A16S|G|784
8HL4|1|A16S|A|785
8HL4|1|A16S|U|786
8HL4|1|A16S|G|787
*
8HL4|1|A16S|C|849
8HL4|1|A16S|C|850

Current chains

Chain A16S

16s rRNA (1493-MER)

Nearby chains

Chain A23S

Large subunit ribosomal RNA; LSU rRNA

Chain AS8P

Small ribosomal subunit protein uS8

Chain L37A

50S ribosomal protein L37Ae

Chain S11P

30S ribosomal protein S11

Chain S12P

30S ribosomal protein S12

Chain S15P

30S ribosomal protein S15

Chain S17P

30S ribosomal protein S17