J4_8HL4_010

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

CUG*CG*CUUAAGGUAGC*GCAUGAAUG

Length

25 nucleotides

Bulged bases

8HL4|1|A23S|G|2058, 8HL4|1|A23S|U|2100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8HL4|1|A23S|C|1977
8HL4|1|A23S|U|1978
8HL4|1|A23S|G|1979
*
8HL4|1|A23S|C|2034
8HL4|1|A23S|G|2035
*
8HL4|1|A23S|C|2053
8HL4|1|A23S|U|2054
8HL4|1|A23S|U|2055
8HL4|1|A23S|A|2056
8HL4|1|A23S|A|2057
8HL4|1|A23S|G|2058
8HL4|1|A23S|G|2059
8HL4|1|A23S|U|2060
8HL4|1|A23S|A|2061
8HL4|1|A23S|G|2062
8HL4|1|A23S|C|2063
*
8HL4|1|A23S|G|2093
8HL4|1|A23S|C|2094
8HL4|1|A23S|A|2095
8HL4|1|A23S|U|2096
8HL4|1|A23S|G|2097
8HL4|1|A23S|A|2098
8HL4|1|A23S|A|2099
8HL4|1|A23S|U|2100
8HL4|1|A23S|G|2101

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain A16S

Small subunit ribosomal RNA; SSU rRNA

Chain AL2P

50S ribosomal protein L2

Chain APTN

Transfer RNA; tRNA