J4_8HL4_013

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

GAUAG*CAG*CGUGUCC*GUC

Length

18 nucleotides

Bulged bases

8HL4|1|APTN|A|7, 8HL4|1|APTN|U|8, 8HL4|1|APTN|U|47, 8HL4|1|APTN|C|48

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8HL4_013 not in the Motif Atlas

Homologous match to J4_4WT8_030

Geometric discrepancy: 0.5059

The information below is about J4_4WT8_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8HL4|1|APTN|G|6
8HL4|1|APTN|A|7
8HL4|1|APTN|U|8
8HL4|1|APTN|A|9
8HL4|1|APTN|G|10
*
8HL4|1|APTN|C|25
8HL4|1|APTN|A|26
8HL4|1|APTN|G|27
*
8HL4|1|APTN|C|43
8HL4|1|APTN|G|44
8HL4|1|APTN|U|45
8HL4|1|APTN|G|46
8HL4|1|APTN|U|47
8HL4|1|APTN|C|48
8HL4|1|APTN|C|49
*
8HL4|1|APTN|G|65
8HL4|1|APTN|U|66
8HL4|1|APTN|C|67

Current chains

Chain APTN

tRNA (76-MER)

Nearby chains

Chain A23S

Large subunit ribosomal RNA; LSU rRNA

Chain AEFG

Elongation factor 2

Chain L10E

50S ribosomal protein L10e