J4_8HSP_007

3D structure

PDB id

8HSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8HSP_007 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0696

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8HSP|1|a|G|297
8HSP|1|a|G|298
8HSP|1|a|A|299
8HSP|1|a|A|300
8HSP|1|a|G|301
*
8HSP|1|a|C|316
8HSP|1|a|G|317
8HSP|1|a|C|318
8HSP|1|a|G|319
*
8HSP|1|a|C|323
8HSP|1|a|A|324
8HSP|1|a|G|325
*
8HSP|1|a|C|337
8HSP|1|a|G|338
8HSP|1|a|U|339
8HSP|1|a|A|340
8HSP|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24