J4_8HSP_010

3D structure

PDB id

8HSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8HSP|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8HSP_010 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0475

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8HSP|1|a|G|1310
8HSP|1|a|G|1311
8HSP|1|a|U|1312
8HSP|1|a|U|1313
8HSP|1|a|C|1314
*
8HSP|1|a|G|1338
8HSP|1|a|G|1339
8HSP|1|a|U|1340
8HSP|1|a|G|1341
8HSP|1|a|A|1342
8HSP|1|a|G|1343
*
8HSP|1|a|C|1404
8HSP|1|a|U|1405
*
8HSP|1|a|A|1597
8HSP|1|a|A|1598
8HSP|1|a|U|1599
8HSP|1|a|C|1600
8HSP|1|a|G|1601
8HSP|1|a|U|1602
8HSP|1|a|A|1603
8HSP|1|a|C|1604

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain s

50S ribosomal protein L23