3D structure

PDB id
8HTZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GCG*CGAAAG*CCGUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
8HTZ|1|A|C|576, 8HTZ|1|A|A|815
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8HTZ_003 not in the Motif Atlas
Homologous match to J4_5J7L_003
Geometric discrepancy: 0.0523
The information below is about J4_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

8HTZ|1|A|G|575
8HTZ|1|A|C|576
8HTZ|1|A|G|577
*
8HTZ|1|A|C|764
8HTZ|1|A|G|765
8HTZ|1|A|A|766
8HTZ|1|A|A|767
8HTZ|1|A|A|768
8HTZ|1|A|G|769
*
8HTZ|1|A|C|810
8HTZ|1|A|C|811
8HTZ|1|A|G|812
8HTZ|1|A|U|813
8HTZ|1|A|A|814
8HTZ|1|A|A|815
8HTZ|1|A|A|816
8HTZ|1|A|C|817
8HTZ|1|A|G|818
8HTZ|1|A|A|819
8HTZ|1|A|U|820
8HTZ|1|A|G|821
*
8HTZ|1|A|C|879
8HTZ|1|A|C|880

Current chains

Chain A
16S rRNA

Nearby chains

Chain H
30S ribosomal protein S8
Chain L
30S ribosomal protein S12
Chain O
30S ribosomal protein S15
Chain Q
30S ribosomal protein S17
Chain U
30S ribosomal protein S21
Chain a
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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